PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00548.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARF
Protein Properties Length: 820aa    MW: 90556.5 Da    PI: 6.3993
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00548.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.2e-23127228199
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                              f+k+lt sd++++g +++p++ ae+       +++++ + +l  +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v
  Rsa1.0_00548.1_g00007.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySLQPPAQ-ELLARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSV 211
                              99***********************9*****97777664.9********************************************* PP

                              EEEE-SSSEE..EEEEE-S CS
                       B3  81 vFkldgrsefelvvkvfrk 99 
                              +F   ++++ +l+++++r+
  Rsa1.0_00548.1_g00007.1 212 IFI--RNEKNQLFLGIRRA 228
                              ***..5688889***9997 PP

2Auxin_resp110.71.5e-36253336183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aaha +t+s F+v+++Pras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  Rsa1.0_00548.1_g00007.1 253 AAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 336
                              799******************************986599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-47113256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-40120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-20126222No hitNo description
PROSITE profilePS5086312.28127229IPR003340B3 DNA binding domain
PfamPF023625.5E-21127228IPR003340B3 DNA binding domain
SMARTSM010199.3E-23127229IPR003340B3 DNA binding domain
PfamPF065076.3E-32253336IPR010525Auxin response factor
SuperFamilySSF542772.49E-7708788No hitNo description
PROSITE profilePS5174523.082714798IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MKLSTSGLVQ QGSHEGEKCL NSELWHACAG PLVSLPSSGS RVVYFPQGHS EQVAATTNKE  60
VDGHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPEEQKET FVPIELGIPS  120
KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSL QPPAQELLAR DLHDVEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIRNEKNQ LFLGIRRATR PQTIVPSSVL  240
SSDSMHIGLL AAAAHASATN SCFTVFFHPR ASQSEFVIQL SKYIKAVFHT RISVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPWHAG TSSLHDGRGE LGSGLPWLRG GGGEQQGLLP LNYPSVGLFP  420
WMQQRLDLAQ LGTDNNQQYQ AMLAAGLQNM GGGDPLRQQF VQLQEPHHQY LQQSASHNSD  480
LMLQQQQQQQ QQASHHLMHA QTQIMSENLP LRQEVSKQPA GGQQSVDQNA YLNAFKMQNG  540
QLQQQWQQHS DMPSPSFTDA SNKYGTTASP MQQNSASPGS AGQHGSNLLN FSITGQSVLP  600
EQLMGEGWSP KASNTFSEPL SLPQAYAGGK SLALEPSSAN VNPSVFGVDP GSSGLFLPST  660
VPRFASSSGG DAEAYPISLA DSGFENSLYN SCMQDTTHEL LHGVGQINSS NQTKNFVKVY  720
KSGSVGRSLD ISRFSSYHEL REELGKMFAI EGLLEDPLRS GWQLVFVDKE NDILLLGDDP  780
WESFVSNVWY IKILSPEDVQ EMGDHGEGSG GSLPQNPTHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-154835739388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0421960.0AF042196.1 Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139709.10.0PREDICTED: auxin response factor 8 isoform X2
RefseqXP_013741963.10.0PREDICTED: auxin response factor 8 isoform X2
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLH9B4D30.0H9B4D3_BRARP; Auxin response factor
STRINGBra028110.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8